Diff of Matlab/Install

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*Matlab Installation [#d4d4a694]
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現在，研究室では8つのMatlabライセンスと，2つのSignal Processing Toolboxのライセンスを保有しています．
2012年1月現在，研究室では8つのMatlabライセンスと，2つのSignal Processing Toolboxのライセンスを保有しています．

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**JAVA runtime environment (Sum Microsystems JRE) [#sc7d193c]

-Open Mandriva Linux Control Center
-Go to Software Management
-Go to "Configure media sources for ..."
-Make sure if "FTP Non-free Updates" is checked.
-Go to "Install & Remove Software"
-Search for "java-1.6.0-sun" to install.  You may be asked to install a few more RPMs.


**Prepare "license.dat" file [#ye431d83]

-Get your "license.dat" file ready (ask Uchiyama)
-Place "license.dat" in /home/yourname/matlab
-Make "/opt" writable (change ownership)
-Open "Konsole" (or any terminal), make yourself root by typing "su" plus the root's password.

 $ su

-Change ownership of /opt directory:

 $ cd /
 $ chown yourname:users opt
    --> yourname means your user name (such as "josh").


**MATLAB R2011a Network Installation [#y27397b0]

-Go to Mathworks MATLAB download page: http://www.mathworks.com/download/
-Use the account information (email and password) to log in to the account.
-Download R2011b for Linux (64-bit); turn on the appropriate check box.
-Click Download button
-Check "Choose products and versions..." to go forward
-Click Continue
-Check the check box to the right of MATLAB (7.12), and click "Continue"
-Download and execute "download_agent". Simply click "OK" to proceed
-Installer is automatically launched. Check "Always trust..." and click "Run"
-"Select download folder" shows up.  Keep the default folder, and click Next
-Click "Yes" and "Download"
-Download sequence begins. It may take a while (~1/2 hours or so).
-After the download completed, check "start installer" and press "finish"
-Choose "install using internet", and go to next
-Check "yes" and go to next
-Select 69**** (license number) Concurrent Network, and Next
-Choose Typical and Next
-GO back to the installer, and enter "/opt/MATLAB/R2011b" in the upper box, then Next
-Click yes
-Enter the path to the license.dat file (should be in /home/yourname/matlab/license.dat. use Browse button), and Next
-Then press "install"
-Press "Finish" to exit


**Make "/opt" UNwritable [#gea5f34c]

-Open "Konsole" (***), make yourself root by typing "su" plus the root's password.
-Change ownership of /opt directory:

 $ cd /
 $ chown root:root opt

-Edit .cshrc file
--First 4 lines read:

 setenv PATH /usr/local/bin:/bin:/usr/bin:/usr/X11R6/bin
 setenv MANPATH /usr/man:/usr/bin/man:/usr/X11R6/man:/usr/share/man:/usr/share/man/man:/usr/local/man
 setenv PATH $HOME/matlab/my_tools:$PATH
 setenv PATH $HOME/matlab/grid_tools/:$PATH

--And edit attributes of Matlab as follows:

 #
 ## Environmental variables related to MatLab
 #
 setenv MATLABROOT /opt/MATLAB/R2011a
 setenv PATH $MATLABROOT/bin:$PATH
 setenv MATLABPATH $HOME
 setenv NCTOOL $HOME/matlab/mexcdf/netcdf_toolbox/netcdf
 setenv MEXTOOL $HOME/matlab/mexcdf/
 # ROMS tools
 setenv ROMSDIR $MATLABPATH/matlab/Roms_tools
 setenv MATLABPATH $MATLABPATH":$ROMSDIR"
 setenv MATLABPATH $MATLABPATH":$ROMSDIR/Preprocessing_tools"
 setenv MATLABPATH $MATLABPATH":$ROMSDIR/Visualization_tools"
 setenv MATLABPATH $MATLABPATH":$ROMSDIR/Nesting_tools"
 setenv MATLABPATH $MATLABPATH":$ROMSDIR/m_map"
 setenv MATLABPATH $MATLABPATH":$ROMSDIR/mask"
 setenv MATLABPATH $MATLABPATH":$ROMSDIR/Tides"
 setenv MATLABPATH $MATLABPATH":$ROMSDIR/Topo"
 setenv MATLABPATH $MATLABPATH":$ROMSDIR/air_sea"
 # my stuff
 setenv MATLABPATH $MATLABPATH":$ROMSDIR/My_tools"
 setenv MATLABPATH $MATLABPATH":$ROMSDIR/My_tools/colormap"
 setenv MATLABPATH $MATLABPATH":$HOME/matlab/ttide"
 setenv MATLABPATH $MATLABPATH":$HOME/matlab/misc"
 setenv MATLABPATH $MATLABPATH":$HOME/matlab/misc/etc"
 setenv MATLABPATH $MATLABPATH":$HOME/matlab/misc/etc2"
 setenv MATLABPATH $MATLABPATH":$HOME/matlab/Guillaume_spec"
 setenv MATLABPATH $MATLABPATH":$HOME/matlab/DIWASP"
 setenv MATLABPATH $MATLABPATH":$HOME/matlab/vol3d"
 # netcdf/mex tools
 setenv MATLABPATH $MATLABPATH":$NCTOOL"
 setenv MATLABPATH $MATLABPATH":$NCTOOL/ncsource"
 setenv MATLABPATH $MATLABPATH":$NCTOOL/nctype"
 setenv MATLABPATH $MATLABPATH":$NCTOOL/ncutility"
 setenv MATLABPATH $MATLABPATH":$MEXTOOL/mexnc"
 setenv MATLABPATH $MATLABPATH":$MEXTOOL/snctools"
 ##alias mat "matlab -nojvm"
 alias mat "matlab -nodesktop -nosplash"
 alias lmstat "/opt/matlab/etc/lmstat -a"
 #
 # Setting different numbers of threads for Open MP programs
 #
    :
    :
    :